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| Old Id | URL | Admin Email | Description | Registered Date | Last Date Valid | Helper URL |
| DS_110 | http://www.cmbi.ru.nl/das/dssp/ | m.hekkelman@cmbi.ru.nl | Information from DSSP | 2005-03-21 | 2009-09-16 | |
| DS_116 | http://das.cbs.dtu.dk:9000/das/netoglyc/ | pws@cbs.dtu.dk | NetOGlyc (http://www.cbs.dtu.dk/services/NetOGlyc) predictions for UniProt. | 2005-03-21 | 2009-08-01 | http://www.cbs.dtu.dk/services/NetOGlyc |
| DS_117 | http://das.cbs.dtu.dk:9000/das/tmhmm/ | pws@cbs.dtu.dk | TMHMM (http://www.cbs.dtu.dk/services/TMHMM) predictions for UniProt. | 2005-03-21 | 2009-01-09 | http://www.cbs.dtu.dk/services/TMHMM/ |
| DS_124 | http://das.sanger.ac.uk/das/uniprotensemblpepfeatures/ | ap3@sanger.ac.uk | Ensembl exon boundary and SNP data projected on UniProt sequence. Based on the COMPARA ENSP-UniProt mapping. | 2005-04-22 | 2009-07-29 | |
| DS_132 | http://das.cbs.dtu.dk:9000/das/cbs_sort/ | pws@cbs.dtu.dk | Aggregation server for CBS predictions related to protein sorting. | 2005-05-23 | 2009-01-09 | http://www.cbs.dtu.dk/services/ |
| DS_143 | http://das.ensembl.org/das/ensembl_Mus_musculus_core_28_33d_cds/ | ek3@sanger.ac.uk | Ensembl CDS | 2005-05-24 | 2009-04-22 | |
| DS_144 | http://das.ensembl.org/das/ensembl_Mus_musculus_core_28_33d_trans/ | ek3@sanger.ac.uk | Ensembl Transcripts | 2005-05-24 | 2009-04-22 | |
| DS_169 | http://mips.gsf.de/cgi-bin/proj/biosapiens/das/saccharomyces_cerevisiae/ | irena.artamonova@gsf.de | Non-positional features on yeast genes. | 2005-08-26 | 2008-06-30 | http://pedant.gsf.de/ |
| DS_170 | http://mispred.enzim.hu/das/mispred/ | nagya@enzim.hu | MisPred provides information about human, mouse, rat, opossum, chicken, clawed frog, fugu, zebrafish, sea squirt, nematode and fruit fly proteins from various database sources identified as mispredicted or abnormal by the MisPred tools. | 2005-09-26 | 2008-08-29 | http://mispred.enzim.hu |
| DS_174 | http://www.sbg.bio.ic.ac.uk:8888/das/human/ | k.fleming@imperial.ac.uk | The 3D-Genomics server contains structural annotations for UniProt sequences | 2005-10-05 | 2008-02-10 | http://www.sbg.bio.ic.ac.uk/3dgenomics |
| DS_179 | http://atgc.lirmm.fr/cgi-bin/das/MethDB/ | grunau@methdb.net | DNA methylation data collected from publications or unpublished data as direct submissions | 2005-10-20 | 2009-06-11 | http://www.methdb.net/ |
| DS_184 | http://das.cbs.dtu.dk:9000/das/netnglyc/ | pws@cbs.dtu.dk | NetNGlyc (www.cbs.dtu.dk/ser vices/NetNGlyc) predictions for UniProt. | 2005-11-03 | 2009-01-09 | http://www.cbs.dtu.dk/services/NetNGlyc |
| DS_185 | http://das.cbs.dtu.dk:9000/das/netacet/ | pws@cbs.dtu.dk | NetAcet (www.cbs.dtu.dk/ser vices/NetAcet) predictions for UniProt. | 2005-11-03 | 2009-06-02 | http://www.cbs.dtu.dk/services/NetAcet |
| DS_186 | http://das.cbs.dtu.dk:9000/das/targetp/ | pws@cbs.dtu.dk | TargetP (www.cbs.dtu.dk/ser vices/TargetP) predictions for UniProt. | 2005-11-03 | 2009-08-01 | http://www.cbs.dtu.dk/services/TargetP |
| DS_189 | http://das.cbs.dtu.dk:9000/das/cbs_total/ | pws@cbs.dtu.dk | Aggregation server for CBS predictions. | 2005-11-03 | 2009-08-01 | http://www.cbs.dtu.dk/services/ |
| DS_202 | http://das.ensembl.org/das/genetarget_m34/ | dj3@sanger.ac.uk | Mouse gene knockout designs for Pentao Liu by David Melvin | 2005-11-30 | 2009-09-16 | |
| DS_246 | http://genome.saitama-med.ac.jp/das/das/profit_mouse/ | bono@saitama-med.ac.jp | Nuclear receptor binding sites predicted by profit using SayaMatcher system | 2006-06-15 | 2007-06-29 | http://sayamatcher.sourceforge.jp/ |
| DS_245 | http://genome.saitama-med.ac.jp/das/das/profit_human/ | bono@saitama-med.ac.jp | Nuclear receptor binding sites predicted by profit using SayaMatcher system | 2006-06-15 | 2007-06-29 | http://sayamatcher.sourceforge.jp/ |
| DS_213 | http://www.eurexpress.org/das/tadb/ | gfeng@hgu.mrc.ac.uk | Mouse Transcriptome Atlas Database by In Situ Hybridization | 2006-03-07 | 2007-09-03 | http://www.eurexpress.org/ |
| DS_233 | http://cathwww.biochem.ucl.ac.uk:9000/das/cath_sptr/ | cathupdate@biochem.ucl.ac.uk | This service returns CATH domain annotations to UniProt sequences. | 2006-03-31 | 2009-09-16 | http://www.biochem.ucl.ac.uk/bsm/cath/ |
| DS_556 | http://www.pancreasexpression.org/biomart/das/default__hsapiens_gene_ensembl__ensembl_das_gene/ | syed@ebi.ac.uk | Gene expression patterns from the Pancreatic Expression Database, a pancreatic cancer resource. | 2008-04-30 | 2009-09-16 | http://www.pancreasexpression.org/ |
| DS_230 | http://l1das.molgen.mpg.de:8080/das/hsflil1_2635/ | ptwork@gmx.net | L1Base Human Full-Length, Intact LINE-1 Elements (NCBI35) | 2006-03-24 | 2009-06-07 | http://line1.molgen.mpg.de/ |
| DS_231 | http://l1das.molgen.mpg.de:8080/das/hsflnil1_2635/ | ptwork@gmx.net | L1Base Human Full-Length 6000nt LINE-1 Elements (NCBI35) | 2006-03-24 | 2009-06-07 | http://line1.molgen.mpg.de/ |
| DS_232 | http://l1das.molgen.mpg.de:8080/das/hsorf2_2635/ | ptwork@gmx.net | L1Base Human ORF2 Intact LINE-1 Elements (NCBI35) | 2006-03-24 | 2009-06-07 | http://line1.molgen.mpg.de/ |
| DS_443 | http://das.sanger.ac.uk/das/cosmic_transcripts_ncbi36/ | am3@sanger.ac.uk | Cosmic transcripts from NCBI36 | 2007-10-03 | 2009-09-16 | http://www.sanger.ac.uk/genetics/CGP/cosmic/ |
| DS_236 | http://www.molgenbioinfo.ua.ac.be/cgi-bin/SNPbox/das/SNPbox_human_37_35j/ | wim.glassee@ua.ac.be | SNPbox | 2006-04-27 | 2008-02-25 | http://www.snpbox.org |
| DS_554 | http://das.sanger.ac.uk/das/ccds_human/ | fsk@sanger.ac.uk | CDS gene models for human as defined by the Consensus CDS project. | 2008-04-29 | 2009-09-16 | http://www.ncbi.nlm.nih.gov/CCDS |
| DS_705 | http://das.sanger.ac.uk/das/iPfamDomain/ | rdf@sanger.ac.uk | List of Pfam domain interaction. | 2008-11-20 | 2009-09-16 | http://ipfam.sanger.ac.uk |
| DS_706 | http://das.ensembl.org/das/ensembl_Homo_sapiens_core_28_35a/ | js5@sanger.ac.uk | Human (Homo sapiens) reference server maintained by the Ensembl project for the NCBI35 assembly. | 2008-11-20 | 2009-04-22 | |
| DS_716 | http://compbio1.csail.mit.edu/das/RFC_CSF/ | nilekim@gmail.com | Conservation scores for loci. | 2008-12-18 | 2009-09-16 | |
| DS_317 | http://mips.gsf.de/cgi-bin/proj/biosapiens/das/arabidopsis_thaliana/ | irena.artamonova@gsf.de | Non-positional annotations of Arabidopsis thaliana genes. | 2006-11-22 | 2008-06-30 | |
| DS_318 | http://genome.imim.es:8080/das/features_tetraodon/ | FCamara@IMIM.ES | Gene predictions on genomes (http://genome.imim.es/genepredictions/index.html). geneid predictions (http://genome.imim.es/research/genepred.html) on Tetraodon genome. | 2006-11-28 | 2009-02-02 | http://genome.imim.es/genepredictions/index.html |
| DS_319 | http://genome.imim.es:8080/das/features_chicken/ | FCamara@IMIM.ES | Gene predictions on genomes (http://genome.imim.es/genepredictions/index.html). geneid predictions (http://genome.imim.es/research/genepred.html) on Chicken genome. | 2006-11-28 | 2009-02-02 | http://genome.imim.es/genepredictions/index.html |
| DS_320 | http://genome.imim.es:8080/das/features_SGPchickenxhuman/ | FCamara@IMIM.ES | Gene predictions on genomes (http://genome.imim.es/genepredictions/index.html). SGP predictions, which combine geneid predictions (http://genome.imim.es/research/genepred.html) with tblastx comparison of the Chicken genome against the Human genome. | 2006-11-28 | 2009-02-02 | http://genome.imim.es/genepredictions/index.html |
| DS_321 | http://genome.imim.es:8080/das/features_SGPhumanxmouse/ | FCamara@IMIM.ES | Gene predictions on genomes (http://genome.imim.es/genepredictions/index.html). SGP predictions, which combine geneid predictions (http://genome.imim.es/research/genepred.html) with tblastx comparison of the Human genome against the Mouse genome. | 2006-11-28 | 2009-02-02 | http://genome.imim.es/genepredictions/index.html |
| DS_322 | http://genome.imim.es:8080/das/features_SGPmousexhuman/ | FCamara@IMIM.ES | Gene predictions on genomes (http://genome.imim.es/genepredictions/index.html). SGP predictions, which combine geneid predictions (http://genome.imim.es/research/genepred.html) with tblastx comparison of the Mouse genome against the Human genome. | 2006-11-28 | 2009-02-02 | http://genome.imim.es/genepredictions/index.html |
| DS_323 | http://genome.imim.es:8080/das/features_SGPratxhuman/ | FCamara@IMIM.ES | Gene predictions on genomes (http://genome.imim.es/genepredictions/index.html). SGP predictions, which combine geneid predictions (http://genome.imim.es/research/genepred.html) with tblastx comparison of the Rat genome against the Human genome. | 2006-11-28 | 2009-02-02 | http://genome.imim.es/genepredictions/index.html |
| DS_324 | http://genome.imim.es:8080/das/features_rat/ | FCamara@IMIM.ES | Gene predictions on genomes (http://genome.imim.es/genepredictions/index.html). geneid predictions (http://genome.imim.es/research/genepred.html) on Rat genome. | 2006-11-28 | 2009-02-02 | http://genome.imim.es/genepredictions/index.html |
| DS_325 | http://genome.imim.es:8080/das/features_mouse/ | FCamara@IMIM.ES | Gene predictions on genomes (http://genome.imim.es/genepredictions/index.html). geneid predictions (http://genome.imim.es/research/genepred.html) on Mouse genome. | 2006-11-28 | 2009-02-02 | http://genome.imim.es/genepredictions/index.html |
| DS_326 | http://genome.imim.es:8080/das/features_human/ | FCamara@IMIM.ES | Gene predictions on genomes (http://genome.imim.es/genepredictions/index.html). geneid predictions (http://genome.imim.es/research/genepred.html) on Human genome. | 2006-11-28 | 2009-02-02 | http://genome.imim.es/genepredictions/index.html |
| DS_328 | http://l1das.molgen.mpg.de:8080/das/rnorf2_233c/ | zemojtel@molgen.mpg.de | Detection and Annotation of Full-Length, Intact L1 Elements in human, mouse and rat (see http://line1.molgen.mpg.de/ and http://l1das.molgen.mpg.de/). L1Xplorer Rat ORF2 Intact LINE-1 Elements (Ens23.3c). | 2006-11-28 | 2009-06-07 | http://line1.molgen.mpg.de |
| DS_329 | http://l1das.molgen.mpg.de:8080/das/rnflnil1_233c/ | zemojtel@molgen.mpg.de | Detection and Annotation of Full-Length, Intact L1 Elements in human, mouse and rat (see http://line1.molgen.mpg.de/ and http://l1das.molgen.mpg.de/). L1Xplorer Rat Full-Length 6000nt LINE-1 Elements (Ens23.3c). | 2006-11-28 | 2009-06-07 | http://line1.molgen.mpg.de |
| DS_330 | http://l1das.molgen.mpg.de:8080/das/rnflil1_233c/ | zemojtel@molgen.mpg.de | Detection and Annotation of Full-Length, Intact L1 Elements in human, mouse and rat (see http://line1.molgen.mpg.de/ and http://l1das.molgen.mpg.de/). L1Xplorer Rat Full-Length, Intact LINE-1 Elements (Ens23.3c). | 2006-11-28 | 2009-06-07 | http://line1.molgen.mpg.de |
| DS_331 | http://l1das.molgen.mpg.de:8080/das/mmorf2_2433/ | zemojtel@molgen.mpg.de | Detection and Annotation of Full-Length, Intact L1 Elements in human, mouse and rat (see http://line1.molgen.mpg.de/ and http://l1das.molgen.mpg.de/). L1Xplorer Mouse ORF2 Intact LINE-1 Elements (Ens24.33) | 2006-11-28 | 2009-06-07 | http://line1.molgen.mpg.de |
| DS_332 | http://l1das.molgen.mpg.de:8080/das/mmflnil1_2433/ | zemojtel@molgen.mpg.de | Detection and Annotation of Full-Length, Intact L1 Elements in human, mouse and rat (see http://line1.molgen.mpg.de/ and http://l1das.molgen.mpg.de/). L1Xplorer Mouse Full-Length 6000nt LINE-1 Elements (Ens24.33) | 2006-11-28 | 2009-06-07 | http://line1.molgen.mpg.de |
| DS_333 | http://l1das.molgen.mpg.de:8080/das/mmflil1_2433/ | zemojtel@molgen.mpg.de | Detection and Annotation of Full-Length, Intact L1 Elements in human, mouse and rat (see http://line1.molgen.mpg.de/ and http://l1das.molgen.mpg.de/). L1Xplorer Mouse Full-Length, Intact LINE-1 Elements (Ens24.33) | 2006-11-28 | 2009-06-07 | http://line1.molgen.mpg.de |
| DS_338 | http://genome.imim.es:8080/das/features_celegans/ | FCamara@IMIM.ES | Gene predictions on genomes (http://genome.imim.es/genepredictions/index.html). geneid predictions (http://genome.imim.es/research/genepred.html) on C. elegans genome. | 2006-11-28 | 2009-02-02 | http://genome.imim.es/genepredictions/index.html |
| DS_339 | http://genome.imim.es:8080/das/features_chimp/ | FCamara@IMIM.ES | Gene predictions on genomes (http://genome.imim.es/genepredictions/index.html). geneid predictions (http://genome.imim.es/research/genepred.html) on Chimp genome. | 2006-11-28 | 2009-02-02 | http://genome.imim.es/genepredictions/index.html |
| DS_340 | http://switpc7.vub.ac.be:9000/das/tango/ | jreumers@vub.ac.be | Prediction of beta-aggregation by the TANGO algorithm | 2006-12-06 | 2007-10-24 | http://tango.embl.de |
| DS_402 | http://bioinf.cs.ucl.ac.uk:8080/das/disodb/ | disodb@cs.ucl.ac.uk | Predictions of intrinsically unstructured regions using DisoPred2 | 2007-04-27 | 2009-03-24 | |
| DS_584 | http://das.sbc.su.se:9000/das/metatm/ | David.Messina@sbc.su.se | MetaTM 1.0 - a consensus method for transmembrane topology prediction. By combining six TM topology prediction programs and two signal peptide predictors in an SVM model, MetaTM typically produces a higher accuracy prediction than any single predictor. Written by Martin Klammer, David N. Messina, and Erik L.L. Sonnhammer. WARNING! All of the underlying prediction programs are run on-the-fly, so MetaTM can take a little while to respond with an answer. We do cache the results, though, so if a request to MetaTM doesn't come back the first time, just re-request the ID and the response should be almost instant. | 2008-10-03 | 2009-09-16 | http://MetaTM.sbc.su.se |
| DS_404 | http://dasmi.bioinf.mpi-inf.mpg.de/das/cpg/ | cbock@mpi-inf.mpg.de | CGI Mapping by Epigenome Prediction | 2007-05-14 | 2007-06-18 | http://neighborhood.bioinf.mpi-inf.mpg.de/CpG_islands_revisited/ |
| DS_442 | http://das.sanger.ac.uk/das/cosmic_transcripts/ | am3@sanger.ac.uk | Cosmic transcripts plotted to the current live Ensembl golden path | 2007-10-03 | 2009-09-15 | http://www.sanger.ac.uk/genetics/CGP/cosmic/ |
| DS_519 | http://das.sbc.su.se:9000//das/coils2/ | David.Messina@sbc.su.se | Coils 2.1 - a coiled-coil comain predictor. Written by A.N. Lupas. | 2008-01-30 | 2008-07-30 | http://www.ch.embnet.org/software/coils/COILS_doc.html |
| DS_545 | http://imed.med.ucm.es:9000/das/tepidas/ | parecheg@med.ucm.es | TEPIDAS is a database built from a set of known HLA I-restricted CD8 T-cell epitopes specific of human pathogenic organisms. The epitopes were obtained from the EPIMHC (Reche et al., Bioinformatics 2005; 21:2140-1) and IMMUNEEPITOPE (Sathiamurthy et al., Immunome Res. 2005, 1:2) databases, and were selected to be experimentally defined in humans infected with the pathogen or immunized with the relevant source antigen. The annotation features served by TEPIDAS correspond to the distinct HLA I molecules that each of these T-cell epitopes can be restricted by. A total of 125 HLA I-restriction annotations are included in TEPIDAS, which can be of two classes, experimental or predicted. HLA I-restriction predictions were obtained using a set of 72 HLA I- specific motif-profiles (Reche et al., Hum. Immunol. 2002, 63:701). In the TEPIDAS note field, the cummulative phenotypic frequency (CMV) of the T-cell epitope HLA I-restriction is provided for five ethnic groups. CMV was computed using the gene and haplotype frequencies of the relevant HLA I alleles (Reche et al. Med. Immunol. 2006, 5:1). | 2008-02-22 | 2009-09-15 | |
| DS_573 | http://www.hgvbaseg2p.org/das/das/WTCCC_T2D_Genotypic/ | owenlancaster@yahoo.co.uk | null | 2008-07-23 | 2009-01-15 | |
| DS_552 | http://das.gersteinlab.org/das/pseudopipe/ | philip.cayting@yale.edu | Yale Pseudogenes | 2008-03-31 | 2009-08-12 | |
| DS_555 | http://das.sanger.ac.uk/das/ccds_mouse/ | fsk@sanger.ac.uk | CDS gene models for mouse as defined by the Consensus CDS project. | 2008-04-29 | 2009-09-15 | http://www.ncbi.nlm.nih.gov/CCDS |
| DS_638 | http://loka.bmc.uu.se/das/herv.hg18.annotation/ | Alvaro.Martinez.Barrio@lcb.uu.se | This data source annotates endogenous retroviral elements and their structural domains as derived from RetroTector (Sperber GO et al., 2007). | 2008-11-17 | 2009-09-15 | http://www.kvir.uu.se/RetroTector/RetroTectorProject.html |
| DS_701 | http://das.ensembl.org/das/ens4936kgenes/ | manuel.corpas@gmail.com | ensembl_genes(human) for DECIPHER | 2008-11-19 | 2009-03-09 | |
| DS_715 | http://genome.crg.es:9000/das/U12_Annotation/ | thomas.derrien@crg.es | Structures of U12 loci | 2008-12-18 | 2009-07-02 | |
| DS_718 | http://hgvbaseg2p-dev.gene.le.ac.uk/das/das/baseline_l1/ | rkh7@le.ac.uk | A collection of Human specific L1 sequences | 2009-01-14 | 2009-06-30 | |
| ENSEMBL_3_WS200 | http://www.ensembl.org/das/Caenorhabditis_elegans.WS200.transcript/ | helpdesk@ensembl.org | Annotation source for Caenorhabditis_elegans transcript | 2009-07-29 | 2009-09-15 | null |
| ENSEMBL_3_calJac3 | http://www.ensembl.org/das/Callithrix_jacchus.calJac3.transcript/ | helpdesk@ensembl.org | Annotation source for Callithrix_jacchus transcript | 2009-09-30 | 2009-09-30 | null |
| ENSEMBL_4_calJac3 | http://www.ensembl.org/das/Callithrix_jacchus.calJac3.translation/ | helpdesk@ensembl.org | Annotation source for Callithrix_jacchus translation | 2009-09-30 | 2009-09-30 | null |
| ENSEMBL_2_BDGP5.13 | http://www.ensembl.org/das/Drosophila_melanogaster.BDGP5.13.karyotype/ | helpdesk@ensembl.org | Annotation source for Drosophila_melanogaster karyotype | 2009-09-30 | 2009-09-30 | null |
| ENSEMBL_7_BDGP5.13 | http://www.ensembl.org/das/Drosophila_melanogaster.BDGP5.13.prediction_transcript/ | helpdesk@ensembl.org | Annotation source for Drosophila_melanogaster prediction_transcript | 2009-09-30 | 2009-09-30 | null |
| DS_843 | http://deskpro16917.dynamic.sanger.ac.uk:9000/das/ens_zfish7_tilling/ | br2@sanger.ac.uk | test this source | 2009-09-25 | 2009-12-02 | |
| DS_574 | http://condor.fugu.biology.qmul.ac.uk:9000/das/condor_mouse/ | adamwoolfe@hotmail.com | CONDOR CNEs in the Mouse genome | 2008-07-29 | 2009-12-07 | http://condor.fugu.biology.qmul.ac.uk |
| DS_575 | http://condor.fugu.biology.qmul.ac.uk:9000/das/condor_rat/ | adamwoolfe@hotmail.com | CONDOR CNE coordinates for the rat genome | 2008-07-29 | 2009-12-07 | http://condor.fugu.biology.qmul.ac.uk |
| DS_576 | http://condor.fugu.biology.qmul.ac.uk:9000/das/condor_human/ | adamwoolfe@hotmail.com | CONDOR CNE coordinates for the human genome | 2008-07-29 | 2009-12-07 | http://condor.fugu.biology.qmul.ac.uk |
| DS_677 | http://das.ensembl.org/das/agilent_4x44/ | manuel.corpas@gmail.com | Definition for Agilent - Human 4x44K (NCBI36) | 2008-11-19 | 2009-12-07 | |
| DS_875 | http://das.sanger.ac.uk/das/test16genes/ | jw12@sanger.ac.uk | Test source only to illustrate setting up of a simple 1.6 data source using parent and parts | 2010-02-15 | 2010-02-15 | |
| DS_168 | http://bioinf.cs.ucl.ac.uk:8080/das/gtduniprot/ | M.Sadowski@cs.ucl.ac.uk | The Genomic Threading Database (GTD) contains structural annotations of all major proteomes made using the GenTHREADER method. | 2005-08-18 | 2010-01-07 | http://bioinf.cs.ucl.ac.uk/GTD |
| ENSEMBL_1_JGI2 | http://test.ensembl.org/das/Ciona_intestinalis.JGI2.reference/ | helpdesk@ensembl.org | Ciona_intestinalis Reference server based on JGI2 assembly. Contains 4390 top level entries. | 2006-10-27 | 2010-03-09 | null |